Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 956 Categories, Downloaded 49.590.442 Times

Bio Electric Field software
Filter: All | Freeware | Demo
 

Bio Electric Field

< 1 2 3 4 5 
Added: September 26, 2010 | Visits: 956

Bio::Location::CoordinatePolicyI Bio::Location::CoordinatePolicyI is an abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location. SYNOPSIS # get a location, e.g., from a SeqFeature $location = $feature->location(); # examine its coordinate computation policy print...



Platforms: *nix

License: Freeware Size: 4.7 MB Download (89): Bio::Location::CoordinatePolicyI Download

Added: November 23, 2010 | Visits: 1.172

Bio::Tools::Run::PiseApplication::freak Bio::Tools::Run::PiseApplication::freak is a Perl module. Bio::Tools::Run::PiseApplication::freak Bioperl class for: FREAK Residue/base frequency table or plot (EMBOSS) Parameters: (see also: http://bioweb.pasteur.fr/seqanal/interfaces/freak.html for available values): freak...





Platforms: *nix

License: Freeware Size: 829.44 KB Download (88): Bio::Tools::Run::PiseApplication::freak Download

Added: October 14, 2010 | Visits: 988

Bio::MAGE::Protocol::SoftwareApplication Bio::MAGE::Protocol::SoftwareApplication is a Perl module. SYNOPSIS use Bio::MAGE::Protocol::SoftwareApplication; # creating an empty instance my $softwareapplication = Bio::MAGE::Protocol::SoftwareApplication->new(); # creating an already populated instance my $softwareapplication =...


Platforms: *nix

License: Freeware Size: 460.8 KB Download (92): Bio::MAGE::Protocol::SoftwareApplication Download

Added: October 19, 2010 | Visits: 1.432

Bio::MAGE::Protocol::Software Bio::MAGE::Protocol::Software - Software represents the software used. SYNOPSIS use Bio::MAGE::Protocol::Software; # creating an empty instance my $software = Bio::MAGE::Protocol::Software->new(); # creating an already populated instance my $software =...


Platforms: *nix

License: Freeware Size: 460.8 KB Download (147): Bio::MAGE::Protocol::Software Download

Added: October 04, 2010 | Visits: 1.197

Bio::Genex::Software Bio::Genex::Software is Perl module with methods for processing data from the GeneX DB table: Software. SYNOPSIS use Bio::Genex::Software; # instantiating an instance my $Software = Bio::Genex::Software->new(id=>47); # retrieve data from the DB for all columns $Software->fetch(); #...


Platforms: *nix

License: Freeware Size: 552.96 KB Download (101): Bio::Genex::Software Download

Added: April 11, 2010 | Visits: 706

Bio::PopGen::IO Bio::PopGen::IO contains input individual,marker,allele information. SYNOPSIS use Bio::PopGen::IO; my $io = new Bio::PopGen::IO(-format => csv, -file => data.csv); # Some IO might support reading in a population at a time my @population; while( my $ind = $io->next_individual ) { push...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (98): Bio::PopGen::IO Download

Added: November 22, 2010 | Visits: 882

Bio::Tree::DistanceFactory Bio::Tree::DistanceFactory is a Perl module to construct a tree using distance based methods. SYNOPSIS use Bio::Tree::DistanceFactory; use Bio::AlignIO; use Bio::Align::DNAStatistics; my $tfactory = Bio::Tree::DistanceFactory->new(-method => "NJ"); my $stats =...


Platforms: *nix

License: Freeware Size: 5.6 MB Download (89): Bio::Tree::DistanceFactory Download

Added: January 21, 2010 | Visits: 1.455

Bio::Index::Blast Bio::Index::Blast is a Perl module with indexes Blast reports and supports retrieval based on query accession(s). SYNOPSIS use strict; use Bio::Index::Blast; my ($indexfile,$file1, $file2); my $index = new Bio::Index::Blast(-filename => $indexfile, -write_flag => 1);...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (91): Bio::Index::Blast Download

Added: August 02, 2010 | Visits: 1.209

Bio::Map::MappableI Bio::Map::MappableI is an object that can be placed in a map. SYNOPSIS # get a Bio::Map::MappableI somehow my $position = $element->map_position(); # these methods will be important for building sorted lists if( $position->equals($p2) ) { # do something } elsif( $position->less_tha($p2)...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (109): Bio::Map::MappableI Download

Added: April 11, 2010 | Visits: 1.009

Bio::Tree::Tree Bio::Tree::Tree is an implementation of TreeI interface. SYNOPSIS # like from a TreeIO my $treeio = new Bio::TreeIO(-format => newick, -file => treefile.dnd); my $tree = $treeio->next_tree; my @nodes = $tree->get_nodes; my $root = $tree->get_root_node; This object holds handles to Nodes...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (136): Bio::Tree::Tree Download

Added: November 14, 2010 | Visits: 1.021

Bio::Factory::SequenceFactoryI Bio::Factory::SequenceFactoryI is a Perl interface that allows for generic building of sequences in factories which create sequences (like SeqIO). SYNOPSIS # do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like use Bio::Seq::SeqFactory; my...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (96): Bio::Factory::SequenceFactoryI Download

Added: November 02, 2010 | Visits: 1.199

Bio::LiveSeq::Translation Bio::LiveSeq::Translation is a translation class for LiveSeq. This stores informations about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (104): Bio::LiveSeq::Translation Download

Added: March 16, 2010 | Visits: 763

Bio::Tools::Run::JavaRunner Bio::Tools::Run::JavaRunner is a Perl module that can run java programs. SYNOPSIS my $runner = Bio::Tools::Run::JavaRunner->new(-jar => $jar); $runner->run(); This module is probably incomplete. It is intended to be a wrapper for running java programs..


Platforms: *nix

License: Freeware Size: 942.08 KB Download (90): Bio::Tools::Run::JavaRunner Download

Added: April 03, 2010 | Visits: 1.153

Bio::Graphics::Glyph::cds Bio::Graphics::Glyph::cds module contains the "cds" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph draws features that are associated with a protein coding region. At high magnifications, draws a series of boxes that are color-coded to indicate the...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (89): Bio::Graphics::Glyph::cds Download

Added: January 06, 2010 | Visits: 1.218

Bio::Graphics::Panel 1.5.2_005 Bio::Graphics::Panel is a Perl module to generate GD images of Bio::Seq objects. SYNOPSIS # This script parses a GenBank or EMBL file named on the command # line and produces a PNG rendering of it. Call it like this: # render.pl my_file.embl | display - use strict; use Bio::Graphics;...


Platforms: *nix

License: Freeware Size: 5.7 MB Download (93): Bio::Graphics::Panel 1.5.2_005 Download

Added: April 24, 2010 | Visits: 1.198

Bio::Graphics::Feature Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel. SYNOPSIS use Bio::Graphics::Feature; # create a simple feature with no internal structure $f = Bio::Graphics::Feature->new(-start => 1000, -stop => 2000, -type => transcript, -name => alpha-1...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (94): Bio::Graphics::Feature Download

Added: February 11, 2010 | Visits: 926

Bio::DB::Flat::BDB::swissprot Bio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file. SYNOPSIS See Bio::DB::Flat. This module allows swissprot files to be stored in Berkeley DB flat files using the Open-Bio standard BDB-indexed flat file scheme. You should not be using this...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (130): Bio::DB::Flat::BDB::swissprot Download

Added: July 15, 2010 | Visits: 1.076

Bio::Graphics::Glyph::minmax Bio::Graphics::Glyph::minmax is the minmax glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph is the common base class for Bio::Graphics::Glyph::graded_segments and Bio::Graphics::Glyph::xyplot. It adds an internal method named minmax() for calculating...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (110): Bio::Graphics::Glyph::minmax Download

Added: October 26, 2010 | Visits: 1.187

Bio::Graphics::FeatureFile Bio::Graphics::FeatureFile is a set of Bio::Graphics features, stored in a file. SYNOPSIS use Bio::Graphics::FeatureFile; my $data = Bio::Graphics::FeatureFile->new(-file => features.txt); # create a new panel and render contents of the file onto it my $panel = $data->new_panel; my...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (93): Bio::Graphics::FeatureFile Download

Added: February 25, 2010 | Visits: 855

Bio::DB::GFF::Feature Bio::DB::GFF::Feature is a relative segment identified by a feature type. Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (92): Bio::DB::GFF::Feature Download

< 1 2 3 4 5