Assays

bioGraph is a set of PHP scripts which can be used in enzyme assays. It currently, this includes pH, Temperature, Michaelis-Menten and Lineweaver-Burke plots.

MethMarker facilitates the design and optimization of gene-specific DNA methylation assays. Beyond its use as an epigenetic primer-design tool, it provides extensive support for epigenetic biomarker optimization. For a given gene or genomic region, MethMarker helps design DNA methylation assays...

Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required...


Platforms: Windows

bint was written for the purpose of obtaining subsets of intensity data from genotyping assays. Either the X & Y intensities for creating cluster plots or Log R Ratio and B Allele Frequencies for CNV detection. Extracting the data for individual SNP/CNV markers or individual samples was slow...


Platforms: Windows, Mac, BSD, Linux

bioGraph is a set of PHP scripts which can be used in enzyme assays. Currently, this includes pH, Temperature, Michaelis-Menten and Lineweaver-Burke plots.


Platforms: Windows, Mac, Linux

RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD) assays.


Platforms: Mac, BSD, Linux

AlleleID is a comprehensive desktop tool designed to address the challenges of pathogen detection, bacterial identification or taxa/species discrimination using microarrays and TaqMan® and molecular beacon qPCR assays. With ClustalW multiple sequence alignment at its core, AlleleID can design...


Platforms: Mac

MRMer reads an mzXML file and infers precursor-ion/product-ion relationships. It displays elution curves of the product ions and allows the user to select or deselect them as candidates for MRM-based assays. MRMer also displays the elution curve of the precursor ions when MS1 scans are present...


Platforms: Windows

The PlateKi application can be used in leading pharmaceutical research laboratories to determine "tight-binding"or "classical" inhibition constants from raw plate-reader data. Associated IC50 values are also determined for compatibility with most corporate databases. Benefits: - High processing...


Platforms: Windows

This is a multiparticle version of the CMorph algorithm previously submitted. The algorithm takes the gradient of the image, and then applies decreasing thresholds and fill operations to attempt to identify objects. One it has found the objects, it attempts to pair them up with objects in the...


Platforms: Matlab

PrimerPlex is an efficient and sophisticated tool for designing oligos for multiplex assays. Multiplex assays facilitate amplification of multiple targets in a single reaction vessel, reducing both the time and cost of experimentation. PrimerPlex designs primers for multiplex PCR assays and...


Platforms: Mac