Ancestry Dna
ICRPfinder finds or generates DNA patterns which can include restriction enzyme recognition sites in coding sequences without changing the translated protein sequence.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 91.95 KB | Download (52): ICRPfinder Download |
MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 5.81 MB | Download (48): matrixGen Download |
MeltDNA Tool For Prediction of DNA Duplex Hybridization & Melting Thermodynamics(delta G, delta H and delta S ,Tm,Ta Prediction)
Platforms: Windows, Mac, Linux
License: Freeware | Size: 645.65 KB | Download (48): MeltDNA Download |
A database to handle voucher specimens of DNA sequences used for molecular phylogenetics.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 1.23 MB | Download (53): NSG's voucher specimen database Download |
ProteinMusic is a Java program converting DNA sequences into music. The original idea for this project came from R. D. King at the University of Wales, Aberystwyth and C. G Angus from the Shamen (King, R.D. & Angus, C.G. (1996)).
Platforms: Windows, Mac, BSD, Linux
License: Freeware | Size: 206.88 KB | Download (48): ProteinMusic Download |
A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 10.88 MB | Download (59): ProteinTracker Download |
RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD) assays.
Platforms: Mac, BSD, Linux
License: Freeware | Size: 15.61 KB | Download (44): RAPD Primer Design from Metagenomes Download |
Find restriction enzymes that help differ known homologe DNA sequences (RFLP). Simulate electrophoresis gels. Usefull to investigate the diversity of a population by one of their common genes. Written in perl, uses bioperl modules and the GD library.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 10.84 KB | Download (51): RFLP planner Download |
Create files with integrity, ancestry and lineage. Embeds arbitrary metadata into files while preserving their structure,
Platforms: Windows, Mac, Linux
License: Freeware | Size: 185.34 KB | Download (50): simple digital object Download |
The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
Platforms: Windows, Mac, Linux
License: Freeware | Size: 43.24 KB | Download (43): TandemSearcher Download |
TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 380.94 KB | Download (52): TaxonDNA Download |
The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
Platforms: Windows, Mac, Linux
License: Freeware | Size: 139.23 KB | Download (43): YeastsIdentification Download |
About Squeak
Squeak s ancestry goes back to the ARPA research community who created the Internet, and the Xerox Palo Alto Research Center which created many of our pervasive technologies, such as the personal computer, the windows and mouse user interface, desktop publishing, the Ethernet, and...
Platforms: Mac
License: Freeware | Size: 10 MB | Download (49): Squeak 3.7 Download |
Genre: Action
About SiN Gold
When the CEO of SinTEK Industries begins injecting the streets with a DNA-altering drug, it s time to reassess the laws of morality. When the same twisted bio-chemist plans to overtake the world with her unholy army of genetically-engineered mutants, it s time to...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 3.8 MB | Download (50): SiN Gold 1.1.3 Download |
Personal Ancestry Writer II (PAWriter II) combines most of the features of the LDS Personal Ancestral File program (PAF) for the Macintosh, for which all development stopped a few years ago after release 2.3.1, with additional features that generate web pages in HTML, word processing files in RTF...
Platforms: Mac
License: Freeware | Size: 5.4 MB | Download (46): PAWriter II Download |
PAW2U is the universal binary version of Personal Ancestry Writer II, aka PAWriter. It combines most of the features of the LDS Personal Ancestral File program (PAF) for the Macintosh, for which all development stopped a few years ago after release 2.3.1, with additional features that generate...
Platforms: Mac
License: Freeware | Size: 16.6 MB | Download (46): PAW2U Download |
NCBI has an implementation of BLAST algorithm on their website at www.ncbi.nlm.nih.gov/BLAST, which is good if you want to query short DNA or protein sequence against various sequence databases. The problem arises when large sequences need to be BLAST'ed against a sequence database or against...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (45): GUI for Basic Local Alignment Search Tool (BLAST) Download |
MOTIFINFO = GIBBSMOTIFSAMPLER(SEQARRAY,MOTIFVECTOR,ALPHABET,OPTIONS) Searches for the motifs in a set of sequences via Gibbs sampling. seqArray is a cell vector of sequence strings. motifVector is a vector of uniformly-spaced motif widths you wish to optimize. The program iterates over these...
Platforms: Matlab
License: Freeware | Size: 10 KB | Download (46): Gibbs Motif Sampler Download |
MCGH is a Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridization (CGH) experiments. CGH on DNA microarray enable us to measure the copy numbers of thousands of genes through the genome. M-CGH allows us to visualize the copy number changes...
Platforms: Matlab
License: Freeware | Size: 5.18 MB | Download (41): MCGH Download |
To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight in BayesPI, namely Laplace prior and Cauchy prior, by using the evidence approximation method. In addition, we divided...
Platforms: Matlab
License: Freeware | Size: 1.96 MB | Download (46): BayesPI: a new biophysical model for studying protein-DNA interaction Download |