Amino Acid Therapy

Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use...

Bio::Graphics::Glyph::cds module contains the "cds" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph draws features that are associated with a protein coding region. At high magnifications, draws a series of boxes that are color-coded to indicate the...

biOpen is a new and unique DNA and protein sequence analysis and structure visualization software based on dynamic integration of analysis tools. This evaluation version includes the interactive multiple trace view, the Documentation window, DNA/RNA analysis tools (including Contig Assembly),...


Platforms: Mac

Structure is a screensaver for Mac OS X that draws on the National Center for Biotechnology Information's protein databases to display beautiful 3D protein structures on your screen. It ships with about ten sample structures and via the Internet has seamless access to a database of tens of...


Platforms: Mac

MutantMaker helps researchers performing site directed mutagenesis screen their potential mutants with restriction enzyme digests rather than costly sequencing. The oligonucleotide sequences suggested by MutantMaker will create or destroy restriction sites while both creating the desired mutant...


Platforms: Mac

The Entrez Widget provides a quick access to the NCBI Databases. You just have to enter your search terms and the result will be displayed in a new browser window.


Platforms: Mac

The DNA Molar Converter widget is a Dashboard widget that allows to perform molar conversions for nucleic acids according to size.


Platforms: Mac

The Protein Molar Converter widget is a Dashboard widget that allows to perform molar conversions for proteins according to size.


Platforms: Mac

SpectroConverter Widget Converts A260 to concentration for dsDNA, ssDNA and ssRNA.


Platforms: Mac

The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field.


Platforms: Mac

The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

The Picomole Ends widget allows to calculate the number of picomole ends per microgram of double stranded linear DNA.


Platforms: Mac

Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles. The program is based on sliding-window analysis that represents an amino acid sequence as a...


Platforms: Windows

The usual way to demonstrate saturation in nucleotide sequences is to plot the fraction of differences between sequences against the evolutionary distance separating them. When the number of observed differences, for example for the fraction of third codon positions, no longer increases with...


Platforms: Windows

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...


Platforms: Mac

A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic and amino acid sequences, text, and masking...


Platforms: Mac

A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)


Platforms: Windows, Mac, Linux