Released: September 11, 2012
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Added: September 11, 2012 | Visits: 164
Ericscript is a computational framework to detect gene fusions from paired end RNA-seq data with high sensitity and specificity.
Platforms: Windows, Mac, Linux
Released: June 13, 2012
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Added: June 13, 2012 | Visits: 525
EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries and provides several layers of annotation based on Entrez Gene to allow the user to highlight useful genes and manage cDNA library projects.
Platforms: Windows, Mac, Linux
Released: December 22, 2012
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Added: December 22, 2012 | Visits: 389
Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
Platforms: Windows, Mac, Linux
Released: July 09, 2012
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Added: July 09, 2012 | Visits: 198
Hawthorn provides a caching and lookup mechanism for bioinformatics ontology formats such as OBO and DAG.
Platforms: Windows, Mac, Linux
Released: October 16, 2012
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Added: October 16, 2012 | Visits: 172
HERAKLES is a reasoning broker framework for OWL (Web Ontology Language) reasoning systems.
Platforms: Windows, Mac, Linux
Released: June 15, 2012
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Added: June 15, 2012 | Visits: 286
IGBM (Identification of gene blocks in microorganisms) implements a BLAST-like method to infer conserved gene clusters among closely related prokaryotes, and provides a graphical user interface to navigate the identified clusters and their annotated info
Platforms: Windows, Mac, Solaris, Linux
Released: September 15, 2012
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Added: September 15, 2012 | Visits: 418
Jeep is a modular, abstract and distributed evolutionnary programming core written in Java, allowing to grow autonomous agents as well a gene pool (as in genetic algorithms).
Platforms: Windows, Mac, Linux
Released: December 21, 2012
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Added: December 21, 2012 | Visits: 547
Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.
Platforms: Windows, Mac, Linux
Released: December 08, 2012
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Added: December 08, 2012 | Visits: 249
Manatee is a web-based gene evaluation and genome annotation
tool. Manatee can store and view annotation for prokaryotic and
eukaryotic genomes.
Platforms: Windows, Mac, Linux
Released: November 05, 2012
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Added: November 05, 2012 | Visits: 334
MapPSO is a tool for Ontology Alignment, which uses Discrete Particle Swarm Optimisation. A particle swarm is used to search for the optimal alignment. The algorithm is massively parallel and adapts naturally on parallel architectures.
Platforms: Windows, Mac, Linux
Released: August 19, 2012
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Added: August 19, 2012 | Visits: 321
Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
Platforms: Windows, Mac, Linux
Released: October 22, 2012
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Added: October 22, 2012 | Visits: 278
OBOES (Open Biomedical Ontology-Based Enrichment and Search) is an information-theory-based platform that embeds new integrative methods allowing biologists to evaluate new hypotheses.
Platforms: Windows, Mac, Linux
Released: September 06, 2012
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Added: September 06, 2012 | Visits: 289
Ontology visualization plugin for Protege in an interactive 3D space.
Platforms: Windows, Mac, Linux
Released: October 01, 2012
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Added: October 01, 2012 | Visits: 261
OSGI4AMI Ontology (http://www.booksonline.iospress.nl/Content/View.aspx?piid=13894) describes devices properties and behavior. Several implementations will be available. Universidad de Zaragoza Java Interfaces Reference Implementation and osgi bundle
Platforms: Windows, Mac, Linux
Released: July 04, 2012
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Added: July 04, 2012 | Visits: 385
The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.
Platforms: Mac, BSD, Linux
Released: June 23, 2012
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Added: June 23, 2012 | Visits: 356
A SOA-based framework for multilingual question answering (QA) systems that answer natural language questions with the help of a domain ontology and structured answer data sources from freely specifiable domains.
Platforms: Windows, Mac, Linux
Released: October 23, 2012
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Added: October 23, 2012 | Visits: 161
Tools designed to assist in creating and using the RadLex ontology (http://www.radlex.org).
Platforms: Windows, Mac, Linux
Released: September 27, 2012
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Added: September 27, 2012 | Visits: 296
RmiR is an R package for the analysis of microRNA and gene expression microarrays.The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...
Platforms: Windows, Mac, Linux
Released: December 20, 2012
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Added: December 20, 2012 | Visits: 345
RssGsc (Rank Sum Statistics for Gene Set Collections) is a bioinformatics tool used to find meaningful gene sets using a ranked list of genes (obtained form an experiment).
Platforms: Windows, Mac, Linux
Released: December 24, 2012
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Added: December 24, 2012 | Visits: 603
Semtinel is an application framework for the semi-automatic creation, maintenance and analysis of hierarchical concept schemes (thesaurus, classification or ontology). Semtinel supports the development of new analysis methods and visualization techniques
Platforms: Windows, Mac, Linux
Windows Software
Albina Merfyn - I find this to be really easy to use. I can...
