Amigo Gene Ontology

Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...

MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...

CLC DNA Workbench (formerly known as CLC Gene Workbench) creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.We invite you to try a fully functional demo of...


Platforms: Mac

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

TreeFitter is designed as an accessible and handy application for parsimony-based tree fitting. TreeFitter is a CLi-based tool that can be used for analyzing problems in historical biogeography, coevolution, and in species tree - gene tree fitting.


Platforms: Windows

Thanks to the recent release of Star Trek Online, the franchise created by visionary Gene Roddenberry over 40 years ago, is once again all the rage. This new massive online multiplayer game from Cryptic Studios puts players at the helm of their very own Starship and lets Trek fans boldly go where...


Platforms: Mac

FluentEditor for OWL is comprehensive tool for editing and manipulating complex ontologies using Controlled Natural Language. Fluent editor provides alternative to XML-based OWL editors that is better suitable for human users. It's main feature is using Controlled English as a knowledge...


Platforms: Windows

Vogon is a ontology-based text annotation instrument specially designed for creating relations between terms in a text. All the created relations can then be exported as RDF triples. Vogon was built using the Java programming language.


Platforms: Windows

Mallard is a handy, Java based application based on the Pintail algorithm designed to work by comparing evolutionary distances between a query and subject sequence over the length of the 16S rRNA gene (small subunit rRNA), by employing a sampling window of specified size, progressing a fixed...


Platforms: Windows

Free Deep Space 9 Screensaver Conceived in 1991, shortly before Gene Roddenberry?s death, DS9 centers on the formerly Cardassian space station, Terok Nor. After the Bajorans liberated themselves from the long and brutal Cardassian Occupation, the United Federation of Planets is invited by the...


Platforms: Windows

Free The Next Generation Screensaver Star Trek: The Next Generation (often abbreviated to TNG) is an American science fiction television series created by Gene Roddenberry as part of the Star Trek franchise. Created about 21 years after the original Star Trek, and set in the 24th century from the...


Platforms: Windows

AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.


Platforms: Windows, Mac, Linux

AgentOWL library support RDF/OWL ontology models in JADE agent system. The library use Jena for ontology model manipulation.


Platforms: Windows, Mac, Linux

AKtive Media is an ontology based cross-media annotation (Images and Text) system. Our goal is to automate the process of annoation by suggesting knowledge to the user in an interactive way while the user is annotating and hence minimizing user effort.


Platforms: Windows, Mac, Linux

The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome.


Platforms: Windows, Mac, Linux

Amine is a Multi-Layer Java Open Source Platform dedicated to the development of various kinds of Intelligent Systems (Knowledge-Based, Ontology-Based, Conceptual Graph Based, NLP, etc.) and Intelligent Agents. See: //amine-platform.sourceforge.net/


Platforms: Windows, Mac, Linux

Arastreju is a Java based engine for ontology based information management.


Platforms: Windows, Mac, Linux

Docgen plugin for Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...). Images, Graphs, URL are readyly included in reports.


Platforms: Windows, Mac, Linux

Dogwood is an ontology-aware Distributed Annotation System (DAS) server framework for the integration of biological, biomedical and clinical data.


Platforms: Windows, Mac, Linux

EPTable is a simple web-based tool to analyze microarray gene expression profiles with additional gene profiles.


Platforms: Mac, BSD, Linux