Amigo Gene Ontology

Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...

Gene's Recipe Cards allows you to organize your recipes in eight re-namable categories for quick access and browsing. You may take digital pictures of your recipes and include them to refresh your memory of the recipe later. You can rank your recipes to quickly help you recognize your favorites....

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Windows

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Mac

Wormbase Converter is a simple, easy to use application designed to help you with the conversion of any Gene ID into any other Gene ID. You can convert a "WormBase ID", a "Gene/Transcript/CDS Sequence Name" or a "Gene Name" into a "WormBase ID", a "Gene Sequence Name" or a "Gene Name". Moreover,...


Platforms: Windows

BCLUST is a small, simple, command prompt based tool specially designed to help you asses reliability of gene clusters from expression data by using consensus tree and bootstrap resampling method. Because of the rapid development of microarray technologies, many of statistical procedures, most...


Platforms: Windows

siliColony is a small, simple, easy to use application specially designed to offer you a tool to help you estimate the probability that a modifier gene is responsible for the segregation of phenotypes. for WindowsAll


Platforms: Windows

LDMgen is a small, easy to use, command prompt based application specially designed to offer users a tool to help you map the disease gene (including location and confidence interval) by using multisite genotype data of case-control studies. The application comes with a default parameters file....


Platforms: Windows

SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments. FEATURES: · splice graph prediction ·...


Platforms: Windows

The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of...


Platforms: Windows

GMDR was built as an Open-Source interaction analysis instrument that is aimed to perform gene-gene interaction with generalized multifactor dimensionality methods. This Java-based tool offers a generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions.


Platforms: Windows, 2K, XP, Windows Vista, 7

Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves...


Platforms: Windows

OrientationChecker is a simple, Java based application specially designed to help you check and alter the orientation of 16S rRNA gene sequences.


Platforms: Windows

Your objective in this funny physics based puzzle game is to help Pancho escape from the crazy canyon. Free his way up and let him escape using his balloons. And pay good attention to keep his balloons intact – it’s a long way down. So avoid cactuses or other spiky and dangerous objects from...


Platforms: Windows

Alignment API is a development tool that allows various ontology matchers to share the same format and interface for accessing matching results. Using ontologies is the privileged way to achieve interoperability among heterogeneous systems within the Semantic web. However, as the ontologies...


Platforms: *nix

Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,...


Platforms: Windows

Games::Battleship::Player is a Battleship player class. SYNOPSIS use Games::Battleship::Player; $aeryk = Games::Battleship::Player->new(name => Aeryk); $gene = Games::Battleship::Player->new(name => Gene); print Player 1: , $aeryk->name, "n", Player 2: , $gene->name, "n";...


Platforms: *nix

GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term =...


Platforms: *nix

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...


Platforms: *nix

Prot+eg+e is an ontology editor and a knowledge-base editor.Prot+eg+e is also an open-source, Java tool that provides an extensible architecture for the creation of customized knowledge-based applications.


Platforms: Mac