Amigo Gene Ontology

Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves...

Your objective in this funny physics based puzzle game is to help Pancho escape from the crazy canyon. Free his way up and let him escape using his balloons. And pay good attention to keep his balloons intact – it’s a long way down. So avoid cactuses or other spiky and dangerous objects from...

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Mac

MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

SpliceGrapher predicts alternative splicing patterns and produces splice graphs that capture in a single structure the ways a gene's exons may be assembled. It enhances gene models using evidence from next-generation sequencing and EST alignments. FEATURES: · splice graph prediction ·...


Platforms: Windows

LDMgen is a small, easy to use, command prompt based application specially designed to offer users a tool to help you map the disease gene (including location and confidence interval) by using multisite genotype data of case-control studies. The application comes with a default parameters file....


Platforms: Windows

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

MeV or Multiple Experiment Viewer is a Java tool to help you with microarray gene expression data analysis. MeV supports 5 input formats, and provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery.


Platforms: Windows

Lives discretely in your menu bar, giving you quick and easy access to all your friends on Facebook. Once installed on your computer, Amigo will also notify you when you have new messages or notifications. Get your friend status updates, pokes, messages, wall-posts, group and event invites...


Platforms: Mac

The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of...


Platforms: Windows

GMDR was built as an Open-Source interaction analysis instrument that is aimed to perform gene-gene interaction with generalized multifactor dimensionality methods. This Java-based tool offers a generalized combinatorial approach for detecting gene-by-gene and gene-by-environment interactions.


Platforms: Windows, 2K, XP, Windows Vista, 7

Wormbase Converter is a simple, easy to use application designed to help you with the conversion of any Gene ID into any other Gene ID. You can convert a "WormBase ID", a "Gene/Transcript/CDS Sequence Name" or a "Gene Name" into a "WormBase ID", a "Gene Sequence Name" or a "Gene Name". Moreover,...


Platforms: Windows

siliColony is a small, simple, easy to use application specially designed to offer you a tool to help you estimate the probability that a modifier gene is responsible for the segregation of phenotypes. for WindowsAll


Platforms: Windows

TreeFitter is designed as an accessible and handy application for parsimony-based tree fitting. TreeFitter is a CLi-based tool that can be used for analyzing problems in historical biogeography, coevolution, and in species tree - gene tree fitting.


Platforms: Windows

BCLUST is a small, simple, command prompt based tool specially designed to help you asses reliability of gene clusters from expression data by using consensus tree and bootstrap resampling method. Because of the rapid development of microarray technologies, many of statistical procedures, most...


Platforms: Windows

FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology


Platforms: Windows

Prot+eg+e is an ontology editor and a knowledge-base editor.Prot+eg+e is also an open-source, Java tool that provides an extensible architecture for the creation of customized knowledge-based applications.


Platforms: Mac

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...


Platforms: Mac

Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,...


Platforms: Windows

GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...


Platforms: *nix