Acid Reflux

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.

iso2l (ˈaisəutuːl, spoken isotool) is a software to calculate the isotopic distribution of a chemical formula or a amino acid chain.


Platforms: Windows, Mac, Linux

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.


Platforms: Windows, Mac, BSD, Linux

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.


Platforms: Windows, Mac, Linux

Ridiculously simple, Prevayler provides transparent ACID persistence and replication for plain old Java objects. It is literally several thousand times faster than using a relational database through JDBC.


Platforms: Windows, Mac, Linux

SIGOF (Security Information Graphics Oriented Forensic) aims at synthetizing security log, stored in a acid/base database schema, in order to provide a graphical / visual oriented security forensic and statistical analysis.


Platforms: Windows, Mac, Linux

A Buzz-like music-tracker and player using software synthetizing to generate acid-like sounds. Cutoff, resonance, decay, accent, distortion, reverb, delay, flanger, phaser and friends...


Platforms: Windows, Mac, Linux

This program fits data to the equations:- Alkaline sigmoid kobs = k/(1+[H]/Ka) Acid sigmoid kobs = k/(1+Ka/[H] When "Fit" is selected a linear reciprocal plot is used to make the initial estimates of kobs and th


Platforms: Mac

AssoCIateD (ACID) is a web application that enables to create, without particular technical notions a web site easily and fast.Features: - Powerful menu management (Javascript required) - News management - Zoom on a news until... - Archived status management (never, always, automatic) -...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

The program computes the number of equilibrium stages for a binary ideal mixture with relative volatility equal to 2.45. The feed is a two phase mixture with a feed quality is equal to 0.85. The distillate, feed and bottom mole fractions are 0.9, 0.5 and 0.1, respectively. The reflux ratio is...


Platforms: Matlab

Two quaternary systems are studied: (1) Acetic Acid - Ethanol - Water- Ethyl Acetate and (2) Acetic Acid - Butanol - Water- Butyl Acetate. In these two systems, liquid phase esterification occurs. The residue curve map is computed using the UNIQUAC model and gas phase acetic acid dimerization....


Platforms: Matlab

Chlorite-iodide-malonic acid (CIMA) reaction gives rise to temporal oscillations. Governing equations and reaction scheme can be found in: (1) I. R. Epstein and J. A. Pojman, An Introduction to Nonlinear Chemical Dynamics, Oscillations, Waves, Patterns, and Chaos, Oxford University Press, Oxford,...


Platforms: Matlab

The batch rectification unit consists of seven theoretical plates, a reboiler and a reflux drum. We fill the reboiler with a 2500 kmol of a mixture of acetone-methanol. Initially, the mixture contains a liquid mole fraction of acetone equal to 40 % mole. The vapor flow rate is set equal to 10...


Platforms: Matlab

This function executes the analysis of the Acid-Base status of a blood sample given the pH and the pCO2 (in mmHg). The function plots a nomogram with 13, differently coloured, zones. The zone in which your data fall represents the Acid-Base status of your blood sample. By itself, the function...


Platforms: Matlab

Acid.RSS is a lightweight and easy to use AJAX website component for displaying latest news / updates in RSS format.AJAX RSS Feed Component features two public modes:- News Summary and Full News and one private mode- The seamless comprehensible admin.The generated RSS file can be displayed not...


Platforms: PHP

Video is now outputed at same resolution as your webcam if desired. Removed the camera input preview, so it won't slow down the program. Added menu item to disable/enable the filters. This program now is compiled with minimum SDK requirement of 10.5


Platforms: Mac

PrimerPlex is an efficient and sophisticated tool for designing oligos for multiplex assays. Multiplex assays facilitate amplification of multiple targets in a single reaction vessel, reducing both the time and cost of experimentation. PrimerPlex designs primers for multiplex PCR assays and...


Platforms: Mac

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.


Platforms: *nix