The RRobinCalc program calculates the starting heat of a pinewood derby race given the number of lanes of the track and the number of times a racer races in each lane. Can be used for other simultaneous multiple competitor events.

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...

Calcuthon is an open source command line calculator written totally in python without any modules. To set Calcuthon up just extract the folder and run the calcuthon03 script. e = the past answer, and y = equals the number in the "cache.txt" file.


Platforms: Mac, Mac OSX

Keyword: Answer, Calculator, Calcuthon, Command, Equals, Extract, Folder, Modules, Number, Python, Quotcachetxtquot, Script, Source, Totally, Written

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.


Platforms: Mac, Mac OSX

Keyword: Analysis, Analysis Tools, Analysis Tools Spin, And Ms, Assembly Gap, Developed Set, Dna Sequence, Dna Sequence Assembly, Editing Analysis, Gap, Gap Editing, Gap Gap, Linux Macosx, Sequence Assembly Gap, Spin Unix, Tools Spin, Unix Linux Macosx

BSmapper - Sequence mapper for bisulfite sequencing reads for DNA methylation studies. Can handle Sanger and 454 reads for mapping to whole genomes or target regions.


Platforms: Mac, Mac OSX

Keyword: And 454, Bisulfite, Bisulfite Sequencing, Bisulfite Sequencing R, Bsmapper Sequence, Bsmapper Sequence Mapper, Dna, Dna Methylation, Genomes, Handle, Handle Sanger, Reads, Reads Dna, Reads Mapping, Sanger, Sequence Mapper, Sequencing Reads, Studies Handle

SeqTEx: identification of average Next-Generation Sequence DNA length from cross-correlation This project is in development and will be submitting the manuscript soon. Check back for more information about using this program later.


Platforms: Mac, Mac OSX

Keyword: Average, Check, Crosscorrelationthis, Development, Identification, Information, Length, Manuscript, Nextgeneration, Program, Project, Seqtex, Sequence, Submitting

DockoMatic is a GUI application that is intended to ease and automate the creation and management of AutoDock jobs for high throughput screening of ligand/receptor interactions.


Platforms: Mac, Mac OSX

Keyword: Application, Autodock, Automate, Creation, Dockomatic, Intended, Interactions, Ligandreceptor, Management, Screening, Throughput

Cahit Arf by Prime Components is an open source (LGPL licensed) utility for WEKA machine learning library which simplifies data extraction from relational databases and ARFF file preparation. Refer to the User's Guide for more technical details and installation. Features * Universal database...


Platforms: Mac, Mac OSX

Keyword: Access, Batch, Command, Conversion, Converts, Drivers, Format, Install, Interactive, Modes, Operate, Query, Results, Scheduled, Skinned, Suitable, Wizard, Working

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.


Platforms: Mac, Mac OSX

Keyword: Aligns, Auto, Automatically, Create, Creates, Creates Text, Data Entry, Database Forms, Dna Sequence, Plasmid Database, Presents User, Program Presents, Program Presents User, Protein Aligns, Text Output File

Enable the user to talk to the calculator to enter the numbers and operations or write them using a drawing panel , it support both English and Arabic languages.It have text to speech of the entered numbers/operations and reading the results.


Platforms: Mac, Mac OSX

Keyword: Arabic, Calculator, Drawing, Enable, English, Enter, Entered, Languagesit, Numbers, Numbersoperations, Operations, Panel, Reading, Results, Speech, Support, Write

A map/reduce based application for mapping short reads generated by the next-generation sequencing machines.


Platforms: Mac, Mac OSX

Keyword: Application, Based, Generated, Machines, Mapping, Mapreduce, Nextgeneration, Reads, Sequencing, Short

VisIVODesktop provides a multi-platform desktop environment for the interactive visualization of cosmological simulations.


Platforms: Mac, Mac OSX

Keyword: Cosmological, Desktop, Environment, Interactive, Multiplatform, Simulations, Visivodesktop, Visualization

Syntainia is an innovative tool for visualization of multiple genomes. It presents a simple and intuitive user interface to view and manipulate relationships between groups of genes. With a clearer gene visualization, it is easier for the researcher to identify synteny conservation among multiple...


Platforms: Mac, Mac OSX

Keyword: Application, Conservation, Desktop, Genomes, Genomessyntainia, Great, Identify, Linux, Multiple, Presents, Researcher, Simple, Smoothly, Synteny, System, Windows, Works

This application converts the XML Polar file Garmin file. All websites which register your trainers don't allow XML files from Polar. Tested with these models: RS300X, CS200


Platforms: Mac, Mac OSX

Keyword: Application, Converts, Cs200, Don, Files, Garmin, Models, Polar, Register, Rs300x, Tested, Trainers, Websites

This project is a collection of applications and approaches to facilitate phylogenomic (phylogenetic and genomic) analytics.


Platforms: Mac, Mac OSX

Keyword: Analytics, Applications, Approaches, Collection, Facilitate, Genomic, Phylogenetic, Phylogenomic, Project

JFractals allows you to explore Julia sets and the Mandelbrot set. Features: * Multithreaded rendering. * Antialiasing * Draws Mandelbrot and Julia sets


Platforms: Mac, Mac OSX

Keyword: Antialiasing, Draws, Explore, Features, Jfractals, Julia, Mandelbrot, Multithreaded, Rendering

Simple UI to test the effectiveness of a heuristic algorithm against the brute force method for path finding among an arbitrary number of arbitrarily placed points on a grid. This is an educational project, don't expect new and better methods.


Platforms: Mac, Mac OSX

Keyword: Algorithm, Arbitrarily, Arbitrary, Brute, Don, Educational, Effectiveness, Expect, Finding, Force, Heuristic, Method, Methods, Number, Points, Project

Small Java application that scans selected folder for movies and creates all-in-one html file with their descriptions downloaded from IMDB.


Platforms: Mac, Mac OSX

Keyword: Allin, Allinone Html, Application, Application Scans, Creates, Creates Allinone, Creates Allinone Html, Descriptions, Descriptions Downloaded, Java Application, Movies Creates, Scans Selected, Scans Selected Folder, Selected Folder, Small Java Application

CADEMIA 1.4.1 / 1.5 Beta 5 CADEMIA Community Edition is the freely downloadable version of this innovative new CAD software. It is supported by an active group of developers. CADEMIA Community Edition uses the GPL License and is mainly designed for private use and teaching purposes. It contains...


Platforms: Mac, Mac OSX

Keyword: Cademia, Developer, Framework, Offers, Professional, Software, Source, Written

While it could be adapted for other organizations, it has been designed specifically for the Cal Band.


Platforms: Mac, Mac OS X v10.6

Keyword: Adapted, Designed, Organizations, Specifically